Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs1004831 chr2:70469555 C/T 0 178 15.37 17.4 1.03 KM Plot
PAAD rs10064846 chr5:172101377 T/C 9.32E-5 173 15.33 16.03 3.9 KM Plot
PAAD rs10092216 chr8:124041083 A/G 9.59E-5 171 9.27 16.03 15.55 KM Plot
PAAD rs10137668 chr14:69949187 A/C 2.97E-5 178 15.57 15.53 5.03 KM Plot
PAAD rs10141021 chr14:74586687 C/A 8.37E-5 177 15.5 16.6 8.8 KM Plot
PAAD rs1018396 chr1:24133612 G/A 4.55E-5 173 12.92 13.13 16.92 KM Plot
PAAD rs10192175 chr2:217911278 C/T 5.19E-5 178 15.97 14.33 7.2 KM Plot
PAAD rs10202716 chr2:70518130 T/C 0 177 15.37 17.32 1.03 KM Plot
PAAD rs10210930 chr2:70429805 A/G 0 178 1.03 17.4 15.37 KM Plot
PAAD rs10232494 chr7:102721081 C/G 6.7E-8 178 16.17 12.2 3.43 KM Plot
PAAD rs1025869 chr2:106781670 C/A 1.17E-5 177 15.53 15.08 4.52 KM Plot
PAAD rs10270236 chr7:157466512 C/T 4.3E-13 170 15.38 16 3.3 KM Plot
PAAD rs1033890 chr1:36608414 C/T 5.68E-5 176 17.83 12.2 16.27 KM Plot
PAAD rs1033891 chr1:36608402 A/G 2.14E-5 176 19.47 12.2 16.27 KM Plot
PAAD rs10404196 chr19:49349624 T/C 1.44E-12 173 16.2 12.6 1.37 KM Plot